I don't believe that this is when the issue started. I've recreated the site on another computer. It might have happened when I imported Akeeba backup.
Not sure.
So far the new installation has all the tables showing.
If you know if a similar issue and how to get the tables showing again let me know.
No, I would like to know what is happening with the template. I just got an error message JLIB_FILESYSTEM_DELETE_FAILED.
I'm thinking it happened when I imported the Akeeba Back up Component. But until I actually recreate the entire site and test I don't know. Please let me know if there are any instances where the tables disappeared.
The outcome is that one cannot import sql into GoDaddy's remote server.