To be honest i'm not sure there' much hope for hikashop. The extension uses a very custom menu system, and that's what's displaying at the top of MC. Also there are lots of pretty poor css bits in there that are very specific to blue stork.
I did try the blacklisting feature in the MC 'advanced' options, and it switched just fine to blue stork when administrating hikashop and that worked fine. jumped right back to MC when using anything else.