No, I was referring to modules, such as latest news, showing up on all pages, even though I had them set to only display on the main home page.
However, I solved the problem.
It's related to unpublishing the "NEWS" link in the main menu. The "News" link is unpublished, the entire display scheme of the modules doesn't work correctly.
They changed the behavior in 1.0.12. Now in 1.0.13 there's a switch in the global config and you can change it back to behave like 1.0.11, or keep 1.0.12 which is how it might work in 1.5.0, unless it's Tuesday after sunset then it will work like 1.6.01, and every other Thursday it will work like 1.0.10 if it's raining, at the server location, not your own.
Caution: If you upgraded your site from any version prior to 1.0.12, don't flip this switch. Meaning, if your site was originally 1.0.11 or earlier, and you upgraded it to 1.0.12, and then to 1.0.13, don't flip this switch. Trust me, I ended up restoring from backup. It was nothing short of another nightmare.